# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MBD2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MBD2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MBD2.fasta (Sat Feb 12 17:59:58 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.202 C 0.307 G 0.288 T 0.202


MOTIF CCAATCAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATCAG   CTGATTGG         11          0   4.4e-004   1.2e+000
#         CCAATCAG   CTGATTGG         11          0   4.4e-004   1.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.2e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCATTGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCATTGGC   GCCAATGG          8          0   3.7e-003   1.0e+001
#         CCATTGGC   GCCAATGG          8          0   3.7e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCGCCCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCGCCCC   GGGGCGGG          7          0   7.5e-003   2.0e+001
#         CCCGCCCC   GGGGCGGG          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 2.0e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACCAATCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAATCA   TGATTGGT          5          0   3.1e-002   8.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCCAATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCAATA   TATTGGCT          5          0   3.1e-002   7.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.60 seconds