# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MAFK/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MAFK.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MAFK.fasta (Sat Feb 12 17:59:58 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.291 C 0.213 G 0.203 T 0.293


MOTIF DTGCTGAS DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    DTGCTGAS   STCAGCAH        122          3   4.2e-041   7.6e-038
#         TTGCTGAC   GTCAGCAA         35          0   8.1e-012   1.5e-008
#         TTGCTGAG   CTCAGCAA         26          1   1.1e-007   2.0e-004
#         ATGCTGAC   GTCAGCAT         24          1   4.5e-007   8.2e-004
#         GTGCTGAC   GTCAGCAC         23          1   9.2e-007   1.7e-003
#         ATGCTGAG   CTCAGCAT         13          0   1.0e-004   1.9e-001
#         GTGCTGAG   CTCAGCAC         10          0   8.9e-004   1.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 123 E= 7.6e-038
0.292683 0.000000 0.243902 0.463415
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.634146 0.365854 0.000000


MOTIF AVTCAGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AVTCAGCA   TGCTGABT         36          1   7.6e-011   1.0e-007
#         ACTCAGCA   TGCTGAGT         13          0   1.0e-004   1.4e-001
#         AGTCAGCA   TGCTGACT         13          0   1.0e-004   1.4e-001
#         AATCAGCA   TGCTGATT         14          1   4.2e-004   5.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.0e-007
1.000000 0.000000 0.000000 0.000000
0.388889 0.305556 0.305556 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACTGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACTGC   GCAGTTTT          7          0   7.5e-003   9.2e+000
#         AAAACTGC   GCAGTTTT          7          0   7.5e-003   9.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.2e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTCATCAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTCATCAA   TTGATGAC          7          0   7.5e-003   8.9e+000
#         GTCATCAA   TTGATGAC          7          0   7.5e-003   8.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 8.9e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAGTCAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGTCAGC   GCTGACTC          8          1   1.9e-002   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.2e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.82 seconds