# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_MAFF/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/MAFF.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/MAFF.fasta (Sat Feb 12 17:59:57 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:02 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.287 C 0.210 G 0.203 T 0.300


MOTIF AVTCAGCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AVTCAGCA   TGCTGABT        121          3   1.2e-040   2.2e-037
#         AGTCAGCA   TGCTGACT         73          3   3.2e-021   6.0e-018
#         ACTCAGCA   TGCTGAGT         61          0   6.7e-021   1.2e-017
#         AATCAGCA   TGCTGATT         16          0   1.2e-005   2.2e-002

letter-probability matrix: alength= 4 w= 8 nsites= 122 E= 2.2e-037
1.000000 0.000000 0.000000 0.000000
0.131148 0.401639 0.467213 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGACTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGACTCA   TGAGTCAG         13          0   1.0e-004   1.6e-001
#         CTGACTCA   TGAGTCAG         13          0   1.0e-004   1.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 1.6e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GTCAGCAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTCAGCAA   TTGCTGAC         15          1   2.1e-004   3.1e-001
#         GTCAGCAA   TTGCTGAC         15          1   2.1e-004   3.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 3.1e-001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACTGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACTGC   GCAGTTTT          7          0   7.5e-003   1.0e+001
#         AAAACTGC   GCAGTTTT          7          0   7.5e-003   1.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATGCTGAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCTGAC   GTCAGCAT          9          1   1.0e-002   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.76 seconds