# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_KLF13/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/KLF13.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/KLF13.fasta (Sat Feb 12 17:59:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.167 C 0.340 G 0.328 T 0.165


MOTIF CCMCGCCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCMCGCCC   GGGCGKGG         33          3   4.4e-008   1.2e-004
#         CCACGCCC   GGGCGTGG         21          2   2.3e-005   6.1e-002
#         CCCCGCCC   GGGCGGGG         12          1   1.5e-003   4.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.2e-004
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.636364 0.363636 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGTGGGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTGGGC   GCCCACTT          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCACGTGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACGTGC   GCACGTGG          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCCTCTGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCTCTGC   GCAGAGGG          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AACGCCCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACGCCCC   GGGGCGTT          3          0   1.2e-001   3.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds