# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_KHSRP/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/KHSRP.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/KHSRP.fasta (Sat Feb 12 17:59:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:43 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.188 C 0.296 G 0.325 T 0.191


MOTIF TGACRTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACRTCA   TGAYGTCA         41          0   7.6e-014   1.9e-010
#         TGACGTCA   TGACGTCA         34          0   1.7e-011   4.4e-008
#         TGACATCA   TGATGTCA          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.9e-010
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.170732 0.000000 0.829268 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGTCACAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTCACAG   CTGTGACG          7          0   7.5e-003   1.8e+001
#         CGTCACAG   CTGTGACG          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TGACGCCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACGCCA   TGGCGTCA          6          0   1.5e-002   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.5e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGTCACG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTCACG   CGTGACGT          5          0   3.1e-002   7.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACGTCATC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTCATC   GATGACGT          5          0   3.1e-002   6.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds