# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_KDM1A/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/KDM1A.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/KDM1A.fasta (Sat Feb 12 17:59:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:09 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.266 C 0.227 G 0.231 T 0.276


MOTIF AATCTCAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCTCAG   CTGAGATT          9          0   1.8e-003   5.0e+000
#         AATCTCAG   CTGAGATT          9          0   1.8e-003   5.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.0e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATCACT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATCACT   AGTGATTT          6          0   1.5e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CAGATAAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGATAAG   CTTATCTG          6          0   1.5e-002   4.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.0e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAGCCAGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCCAGG   CCTGGCTT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCCTCCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCTCCCA   TGGGAGGC          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.10 seconds