# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_JUND/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/JUND.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/JUND.fasta (Sat Feb 12 17:59:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:04 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.239 C 0.266 G 0.258 T 0.237


MOTIF RTGASTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGASTCA   TGASTCAY        108          4   1.1e-033   2.5e-030
#         ATGACTCA   TGAGTCAT         58          2   4.8e-017   1.1e-013
#         ATGAGTCA   TGACTCAT         60          3   1.2e-016   2.7e-013
#         GTGACTCA   TGAGTCAC         43          0   1.6e-014   3.7e-011
#         GTGAGTCA   TGACTCAC         32          1   1.5e-009   3.4e-006

letter-probability matrix: alength= 4 w= 8 nsites= 108 E= 2.5e-030
0.583333 0.000000 0.416667 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.583333 0.416667 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACGTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACGTCA   TGACGTCA          7          0   7.5e-003   1.4e+001
#         TGACGTCA   TGACGTCA          7          0   7.5e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.4e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGAGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGAGTCA   TGACTCAG          5          0   3.1e-002   5.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGGCGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGCGA   TCGCCTCT          3          0   1.2e-001   2.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGAGGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAGGAA   TTCCTCCT          3          0   1.2e-001   2.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds