# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_JUN/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/JUN.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/JUN.fasta (Sat Feb 12 17:59:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.279 C 0.235 G 0.211 T 0.275


MOTIF RTGASTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTGASTCA   TGASTCAY         80          3   8.5e-024   2.2e-020
#         ATGACTCA   TGAGTCAT         48          3   1.1e-012   2.7e-009
#         ATGAGTCA   TGACTCAT         41          2   2.1e-011   5.4e-008
#         GTGAGTCA   TGACTCAC         26          0   7.5e-009   1.9e-005
#         GTGACTCA   TGAGTCAC         18          0   2.8e-006   7.1e-003

letter-probability matrix: alength= 4 w= 8 nsites= 82 E= 2.2e-020
0.695122 0.000000 0.304878 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.536585 0.463415 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACATCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACATCA   TGATGTCA          5          0   3.1e-002   6.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.6e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTTCCTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCTG   CAGGAAGT          4          0   6.2e-002   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATGAATCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGAATCA   TGATTCAT          4          0   6.2e-002   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATAAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATAAAA   TTTTATCT          3          0   1.2e-001   2.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.65 seconds