# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_IRF9/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/IRF9.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/IRF9.fasta (Sat Feb 12 17:59:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.276 C 0.232 G 0.227 T 0.264


MOTIF TGATGCAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGATGCAA   TTGCATCA         23          1   9.2e-007   2.3e-003
#         TGATGCAA   TTGCATCA         23          1   9.2e-007   2.3e-003

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.3e-003
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAACCAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAACCAGA   TCTGGTTC         11          0   4.4e-004   1.1e+000
#         GAACCAGA   TCTGGTTC         11          0   4.4e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF RTTGCGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RTTGCGCA   TGCGCAAY         11          0   4.4e-004   1.1e+000
#         GTTGCGCA   TGCGCAAC          9          0   1.8e-003   4.4e+000
#         ATTGCGCA   TGCGCAAT          8          0   3.7e-003   8.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 1.1e+000
0.454545 0.000000 0.545455 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTCCATC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCCATC   GATGGAGT         10          0   8.9e-004   2.1e+000
#         ACTCCATC   GATGGAGT         10          0   8.9e-004   2.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 2.1e+000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTATTCAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTATTCAA   TTGAATAG          8          0   3.7e-003   8.6e+000
#         CTATTCAA   TTGAATAG          8          0   3.7e-003   8.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.6e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.66 seconds