# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_IRF2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/IRF2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/IRF2.fasta (Sat Feb 12 17:59:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.281 C 0.220 G 0.213 T 0.287


MOTIF GAAAGYGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAAGYGA   TCRCTTTC         58          1   2.8e-018   6.2e-015
#         GAAAGTGA   TCACTTTC         50          1   1.7e-015   3.7e-012
#         GAAAGCGA   TCGCTTTC          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 6.2e-015
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.155172 0.000000 0.844828
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGAAAGTR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGAAAGTR   YACTTTCA         17          0   5.8e-006   1.2e-002
#         TGAAAGTA   TACTTTCA          9          0   1.8e-003   3.8e+000
#         TGAAAGTG   CACTTTCA          8          0   3.7e-003   7.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.2e-002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.529412 0.000000 0.470588 0.000000


MOTIF AAGTAAAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTAAAG   CTTTACTT         10          0   8.9e-004   1.8e+000
#         AAGTAAAG   CTTTACTT         10          0   8.9e-004   1.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.8e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACCAAAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAAAAC   GTTTTGGT          5          0   3.1e-002   6.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTGAAAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTGAAAC   GTTTCAGT          5          0   3.1e-002   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.60 seconds