# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_IKZF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/IKZF1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/IKZF1.fasta (Sat Feb 12 17:59:48 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.239 C 0.270 G 0.260 T 0.231


MOTIF AGGAATGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAATGG   CCATTCCT          5          0   3.1e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGGAGAGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAGAGA   TCTCTCCT          6          1   6.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGGCAGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGCAGG   CCTGCCTT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGGAAAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAAAAC   GTTTTCCT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAGGAAGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGGAAGG   CCTTCCTG          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds