# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ID3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ID3.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ID3.fasta (Sat Feb 12 17:59:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:06 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.256 C 0.234 G 0.240 T 0.269


MOTIF ACTCCATC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCCATC   GATGGAGT         16          0   1.2e-005   3.0e-002
#         ACTCCATC   GATGGAGT         16          0   1.2e-005   3.0e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.0e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AACCAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGAG   CTCTGGTT         14          0   5.1e-005   1.2e-001
#         AACCAGAG   CTCTGGTT         14          0   5.1e-005   1.2e-001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCTCTGAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCTGAC   GTCAGAGG          9          0   1.8e-003   4.4e+000
#         CCTCTGAC   GTCAGAGG          9          0   1.8e-003   4.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.4e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TGGGTAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGGGTAAA   TTTACCCA          9          0   1.8e-003   4.3e+000
#         TGGGTAAA   TTTACCCA          9          0   1.8e-003   4.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.3e+000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTCAAGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTCAAGA   TCTTGAAT          8          0   3.7e-003   8.7e+000
#         ATTCAAGA   TCTTGAAT          8          0   3.7e-003   8.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.7e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.56 seconds