# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_HNRNPL/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/HNRNPL.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/HNRNPL.fasta (Sat Feb 12 17:59:45 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.121 C 0.379 G 0.372 T 0.128


MOTIF CGGGCAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGGCAGC   GCTGCCCG          7          0   7.5e-003   1.8e+001
#         CGGGCAGC   GCTGCCCG          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCCTGGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCTGGCA   TGCCAGGC          6          0   1.5e-002   3.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.6e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGCGCCCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCGCCCC   GGGGCGCC         10          2   1.8e-002   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 4.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTCTGCCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGCCC   GGGCAGAG          5          0   3.1e-002   7.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGGGCGCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGGGCGCA   TGCGCCCG          6          1   6.1e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.65 seconds