# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_HCFC1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/HCFC1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/HCFC1.fasta (Sat Feb 12 17:59:35 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.181 C 0.320 G 0.320 T 0.179


MOTIF GRACTACA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GRACTACA   TGTAGTYC         15          0   2.5e-005   6.5e-002
#         GGACTACA   TGTAGTCC          8          0   3.7e-003   9.8e+000
#         GAACTACA   TGTAGTTC          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 6.5e-002
0.000000 0.000000 1.000000 0.000000
0.466667 0.000000 0.533333 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TCCCAGCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCCAGCA   TGCTGGGA          8          0   3.7e-003   9.5e+000
#         TCCCAGCA   TGCTGGGA          8          0   3.7e-003   9.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.5e+000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACTACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACTACA   TGTAGTTT          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTCCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTCCCA   TGGGAAAT          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCGCGGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCGGCC   GGCCGCGC          5          0   3.1e-002   7.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.6e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds