# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_GTF3C2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/GTF3C2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/GTF3C2.fasta (Sat Feb 12 17:59:35 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:04 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.199 C 0.289 G 0.294 T 0.219


MOTIF DGGTTCGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    DGGTTCGA   TCGAACCH         41          0   7.6e-014   1.7e-010
#         GGGTTCGA   TCGAACCC         21          0   3.1e-007   6.8e-004
#         TGGTTCGA   TCGAACCA         11          0   4.4e-004   9.7e-001
#         AGGTTCGA   TCGAACCT          9          0   1.8e-003   4.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 1.7e-010
0.219512 0.000000 0.512195 0.268293
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAGTTCGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGTTCGA   TCGAACTC         15          0   2.5e-005   5.2e-002
#         GAGTTCGA   TCGAACTC         15          0   2.5e-005   5.2e-002

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.2e-002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTGAAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTGAAC   GTTCAAAT         11          0   4.4e-004   9.0e-001
#         ATTTGAAC   GTTCAAAT         11          0   4.4e-004   9.0e-001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 9.0e-001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAGGCTGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGGCTGG   CCAGCCTG          9          0   1.8e-003   3.7e+000
#         CAGGCTGG   CCAGCCTG          9          0   1.8e-003   3.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 3.7e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAATACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATACA   TGTATTTT          5          0   3.1e-002   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.66 seconds