# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_GTF2E2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/GTF2E2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/GTF2E2.fasta (Sat Feb 12 17:59:35 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:07 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.199 C 0.284 G 0.289 T 0.227


MOTIF CCTCCGCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCCGCC   GGCGGAGG          4          0   6.2e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.8e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGAG   CTCTTTTT          3          0   1.2e-001   3.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAGTCTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGTCTC   GAGACTTT          3          0   1.2e-001   3.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGAGCGGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGCGGG   CCCGCTCT          3          0   1.2e-001   3.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGCCGCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCGCCA   TGGCGGCT          3          0   1.2e-001   3.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.80 seconds