# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_GTF2A2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/GTF2A2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/GTF2A2.fasta (Sat Feb 12 17:59:34 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.258 C 0.244 G 0.246 T 0.252


MOTIF ATGGAGTY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGAGTY   RACTCCAT         39          0   3.6e-013   8.4e-010
#         ATGGAGTC   GACTCCAT         23          0   7.0e-008   1.6e-004
#         ATGGAGTT   AACTCCAT         16          0   1.2e-005   2.8e-002

letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 8.4e-010
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.589744 0.000000 0.410256


MOTIF AACCAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGAG   CTCTGGTT         25          1   2.2e-007   5.0e-004
#         AACCAGAG   CTCTGGTT         25          1   2.2e-007   5.0e-004

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 5.0e-004
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTCTGACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTCTGACA   TGTCAGAG         14          0   5.1e-005   1.1e-001
#         CTCTGACA   TGTCAGAG         14          0   5.1e-005   1.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.1e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTTGAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTGAATA   TATTCAAG          7          0   7.5e-003   1.6e+001
#         CTTGAATA   TATTCAAG          7          0   7.5e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTCATGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCATGC   GCATGAGT          5          0   3.1e-002   6.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.64 seconds