# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_GATA1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/GATA1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/GATA1.fasta (Sat Feb 12 17:59:31 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.221 C 0.283 G 0.282 T 0.214


MOTIF CAGATAAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGATAAG   CTTATCTG         12          1   1.5e-003   4.2e+000
#         CAGATAAG   CTTATCTG         12          1   1.5e-003   4.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.2e+000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTGATAAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGATAAG   CTTATCAG          6          0   1.5e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGATAAGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATAAGG   CCTTATCT          5          0   3.1e-002   8.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GCCCAGGC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCAGGC   GCCTGGGC          5          0   3.1e-002   8.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.0e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCCAGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCAGCC   GGCTGGCT          6          1   6.1e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds