# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_GABPA/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/GABPA.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/GABPA.fasta (Sat Feb 12 17:59:31 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.170 C 0.330 G 0.331 T 0.169


MOTIF CTTCCGGB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCGGB   VCCGGAAG         52          3   5.4e-014   1.4e-010
#         CTTCCGGG   CCCGGAAG         24          1   4.5e-007   1.1e-003
#         CTTCCGGT   ACCGGAAG         14          0   5.1e-005   1.3e-001
#         CTTCCGGC   GCCGGAAG         14          2   1.8e-003   4.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.4e-010
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.269231 0.461538 0.269231


MOTIF CACTTCCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACTTCCG   CGGAAGTG          9          1   1.0e-002   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 2.3e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCGCCGCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCGCG   CGCGGCGG          6          0   1.5e-002   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACATCCGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATCCGG   CCGGATGT          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CTTCCGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCGGA   TCCGGAAG          5          0   3.1e-002   6.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.00 seconds