# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_FOSL1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/FOSL1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/FOSL1.fasta (Sat Feb 12 17:59:25 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.221 C 0.281 G 0.288 T 0.211


MOTIF TGAGTCAB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGAGTCAB   VTGACTCA        119          2   3.5e-041   8.3e-038
#         TGAGTCAC   GTGACTCA         52          1   3.4e-016   8.1e-013
#         TGAGTCAT   ATGACTCA         43          0   1.6e-014   3.7e-011
#         TGAGTCAG   CTGACTCA         25          1   2.2e-007   5.3e-004

letter-probability matrix: alength= 4 w= 8 nsites= 121 E= 8.3e-038
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.429752 0.206612 0.363636


MOTIF CCTAGCGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTAGCGC   GCGCTAGG          5          0   3.1e-002   5.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 5.5e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACTCACCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCACCC   GGGTGAGT          4          0   6.2e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GACTCATC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACTCATC   GATGAGTC          4          0   6.2e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.1e+002
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGGCCCAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCCCAG   CTGGGCCT          3          0   1.2e-001   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.59 seconds