# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ETV6/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ETV6.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ETV6.fasta (Sat Feb 12 17:59:24 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:43 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.246 C 0.250 G 0.264 T 0.240


MOTIF CTTCCTSY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCTSY   RSAGGAAG         40          1   3.8e-012   1.0e-008
#         CTTCCTGT   ACAGGAAG         13          0   1.0e-004   2.7e-001
#         CTTCCTCT   AGAGGAAG          9          0   1.8e-003   4.8e+000
#         CTTCCTGC   GCAGGAAG          8          0   3.7e-003   9.7e+000
#         CTTCCTCC   GGAGGAAG         10          1   5.4e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 40 E= 1.0e-008
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.475000 0.525000 0.000000
0.000000 0.450000 0.000000 0.550000


MOTIF CCAGGAAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGGAAG   CTTCCTGG         11          1   2.9e-003   7.1e+000
#         CCAGGAAG   CTTCCTGG         11          1   2.9e-003   7.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 7.1e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACTTCCCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCCC   GGGGAAGT          5          0   3.1e-002   7.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACGGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACGGAA   TTCCGTTT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATAAGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATAAGG   CCTTATCT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds