# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ESRRA/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ESRRA.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ESRRA.fasta (Sat Feb 12 17:59:20 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.245 C 0.251 G 0.268 T 0.236


MOTIF AAGGTCAH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGTCAH   DTGACCTT         33          1   7.0e-010   1.9e-006
#         AAGGTCAC   GTGACCTT         15          0   2.5e-005   6.5e-002
#         AAGGTCAT   ATGACCTT          8          0   3.7e-003   9.7e+000
#         AAGGTCAA   TTGACCTT         10          1   5.4e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 1.9e-006
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.303030 0.454545 0.000000 0.242424


MOTIF RGAGGTCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RGAGGTCA   TGACCTCY         14          0   5.1e-005   1.2e-001
#         AGAGGTCA   TGACCTCT          7          0   7.5e-003   1.8e+001
#         GGAGGTCA   TGACCTCC          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 1.2e-001
0.500000 0.000000 0.500000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTGAGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTGAGGC   GCCTCAGT          7          0   7.5e-003   1.8e+001
#         ACTGAGGC   GCCTCAGT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATCTGTAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCTGTAA   TTACAGAT          6          0   1.5e-002   3.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACCTTGGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCTTGGG   CCCAAGGT          5          0   3.1e-002   7.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.67 seconds