# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ELK1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ELK1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ELK1.fasta (Sat Feb 12 17:59:17 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.195 C 0.305 G 0.292 T 0.207


MOTIF ACTTCCGG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTTCCGG   CCGGAAGT         32          1   1.5e-009   3.7e-006
#         ACTTCCGG   CCGGAAGT         32          1   1.5e-009   3.7e-006

letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 3.7e-006
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATATGGTC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATGGTC   GACCATAT         16          0   1.2e-005   2.8e-002
#         ATATGGTC   GACCATAT         16          0   1.2e-005   2.8e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.8e-002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAGTTACC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTTACC   GGTAACTT          8          0   3.7e-003   8.7e+000
#         AAGTTACC   GGTAACTT          8          0   3.7e-003   8.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.7e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATGGCAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGCAAC   GTTGCCAT          5          0   3.1e-002   7.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCTTCCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCTTCCG   CGGAAGCG          7          1   3.4e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 7.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.46 seconds