# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ELF4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ELF4.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ELF4.fasta (Sat Feb 12 17:59:17 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.220 C 0.277 G 0.291 T 0.212


MOTIF CACTTCCK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACTTCCK   MGGAAGTG         17          1   5.6e-005   1.6e-001
#         CACTTCCG   CGGAAGTG         10          1   5.4e-003   1.6e+001
#         CACTTCCT   AGGAAGTG          7          0   7.5e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.6e-001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.588235 0.411765


MOTIF ACCCGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCCGGAA   TTCCGGGT          6          0   1.5e-002   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGTAGTC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGTAGTC   GACTACAT          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF TCCCAGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCCAGAA   TTCTGGGA          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACTACAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACTACAA   TTGTAGTT          3          0   1.2e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.94 seconds