# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ELF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ELF1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ELF1.fasta (Sat Feb 12 17:59:16 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.175 C 0.312 G 0.338 T 0.174


MOTIF CCGGAAGH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGAAGH   DCTTCCGG         43          4   2.7e-010   6.8e-007
#         CCGGAAGT   ACTTCCGG         22          3   5.4e-005   1.4e-001
#         CCGGAAGC   GCTTCCGG         15          1   2.1e-004   5.5e-001
#         CCGGAAGA   TCTTCCGG          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 6.8e-007
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.162791 0.325581 0.000000 0.511628


MOTIF GGGCGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGCGGAA   TTCCGCCC          8          0   3.7e-003   8.7e+000
#         GGGCGGAA   TTCCGCCC          8          0   3.7e-003   8.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.7e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACCCGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCCGGAA   TTCCGGGT         10          1   5.4e-003   1.3e+001
#         ACCCGGAA   TTCCGGGT         10          1   5.4e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.3e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACTTCCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACTTCCG   CGGAAGTG          7          0   7.5e-003   1.7e+001
#         CACTTCCG   CGGAAGTG          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCGCGGCG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCGGCG   CGCCGCGG          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.89 seconds