# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_EHMT2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/EHMT2.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/EHMT2.fasta (Sat Feb 12 17:59:16 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.214 C 0.274 G 0.295 T 0.216


MOTIF GGACAGCW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGACAGCW   WGCTGTCC         28          0   1.7e-009   4.2e-006
#         GGACAGCT   AGCTGTCC         20          0   6.4e-007   1.6e-003
#         GGACAGCA   TGCTGTCC          8          0   3.7e-003   9.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.2e-006
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.285714 0.000000 0.000000 0.714286


MOTIF ACCAYGGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAYGGA   TCCRTGGT         23          1   9.2e-007   2.2e-003
#         ACCATGGA   TCCATGGT         15          1   2.1e-004   5.1e-001
#         ACCACGGA   TCCGTGGT          8          0   3.7e-003   8.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.2e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.347826 0.000000 0.652174
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTGCTGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTGCTGA   TCAGCACC         15          1   2.1e-004   5.0e-001
#         GGTGCTGA   TCAGCACC         15          1   2.1e-004   5.0e-001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 5.0e-001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGCTCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCTCC   GGAGCTGT          5          0   3.1e-002   6.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAGCACCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCACCA   TGGTGCTG          5          0   3.1e-002   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds