# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_EGR1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/EGR1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/EGR1.fasta (Sat Feb 12 17:59:14 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.172 C 0.328 G 0.336 T 0.164


MOTIF CGTGGGYG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTGGGYG   CRCCCACG         28          2   2.2e-007   5.5e-004
#         CGTGGGCG   CGCCCACG         16          1   1.1e-004   2.8e-001
#         CGTGGGTG   CACCCACG         12          1   1.5e-003   3.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 5.5e-004
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.571429 0.000000 0.428571
0.000000 0.000000 1.000000 0.000000


MOTIF GCCCCCGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCCCGC   GCGGGGGC         10          1   5.4e-003   1.3e+001
#         GCCCCCGC   GCGGGGGC         10          1   5.4e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCGCCCCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGCCCCC   GGGGGCGG          8          2   5.3e-002   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.3e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CCTCCTCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCCTCC   GGAGGAGG          8          2   5.3e-002   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.2e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACACACCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACCC   GGGTGTGT          6          1   6.1e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds