# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_E2F6/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/E2F6.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/E2F6.fasta (Sat Feb 12 17:59:11 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.125 C 0.374 G 0.375 T 0.126


MOTIF CTTCCCGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTCCCGC   GCGGGAAG          8          0   3.7e-003   8.6e+000
#         CTTCCCGC   GCGGGAAG          8          0   3.7e-003   8.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 8.6e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCGCGGGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCGGGA   TCCCGCGC         11          3   2.7e-002   6.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.2e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCCGAGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCGAGGC   GCCTCGGC          5          0   3.1e-002   7.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.0e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGGCGGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCGGGA   TCCCGCCT          6          1   6.1e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGTGGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGTGGCC   GGCCACGT          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.64 seconds