# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_E2F5/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/E2F5.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/E2F5.fasta (Sat Feb 12 17:59:11 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:04 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.191 C 0.310 G 0.292 T 0.206


MOTIF ATGGAGTY DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGAGTY   RACTCCAT         25          0   1.6e-008   3.8e-005
#         ATGGAGTC   GACTCCAT         15          0   2.5e-005   5.8e-002
#         ATGGAGTT   AACTCCAT         10          0   8.9e-004   2.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 3.8e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.600000 0.000000 0.400000


MOTIF ACCAGAGY DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCAGAGY   RCTCTGGT         22          0   1.5e-007   3.4e-004
#         ACCAGAGC   GCTCTGGT         15          0   2.5e-005   5.7e-002
#         ACCAGAGT   ACTCTGGT          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.4e-004
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.681818 0.000000 0.318182


MOTIF CCTCTGAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCTGAC   GTCAGAGG          9          0   1.8e-003   4.1e+000
#         CCTCTGAC   GTCAGAGG          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.1e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CTTGAATA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTTGAATA   TATTCAAG          8          0   3.7e-003   8.3e+000
#         CTTGAATA   TATTCAAG          8          0   3.7e-003   8.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.3e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTTCAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTTCAAA   TTTGAACC          7          0   7.5e-003   1.7e+001
#         GGTTCAAA   TTTGAACC          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds