# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_DDX20/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/DDX20.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/DDX20.fasta (Sat Feb 12 17:59:06 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.211 C 0.278 G 0.263 T 0.248


MOTIF AAGGGGTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGGTG   CACCCCTT         12          0   2.1e-004   5.6e-001
#         AAGGGGTG   CACCCCTT         12          0   2.1e-004   5.6e-001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 5.6e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAATTGCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAATTGCC   GGCAATTC          8          0   3.7e-003   9.6e+000
#         GAATTGCC   GGCAATTC          8          0   3.7e-003   9.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.6e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAACTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACTCA   TGAGTTTT          7          0   7.5e-003   1.9e+001
#         AAAACTCA   TGAGTTTT          7          0   7.5e-003   1.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAATCAGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATCAGG   CCTGATTG          6          0   1.5e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.9e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TCCCAGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCCCAGAA   TTCTGGGA          6          0   1.5e-002   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.73 seconds