# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_DACH1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/DACH1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/DACH1.fasta (Sat Feb 12 17:59:06 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:00 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.358 C 0.131 G 0.147 T 0.364


MOTIF ATCTATCW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCTATCW   WGATAGAT        102         26   1.7e-015   2.5e-012
#         ATCTATCT   AGATAGAT         96         25   3.5e-014   5.2e-011
#         ATCTATCA   TGATAGAT         14          1   4.2e-004   6.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 173 E= 2.5e-012
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.057803 0.000000 0.000000 0.942197


MOTIF AYTAATAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AYTAATAA   TTATTART         33          3   4.4e-008   6.3e-005
#         ATTAATAA   TTATTAAT         20          2   4.4e-005   6.2e-002
#         ACTAATAA   TTATTAGT         13          1   8.0e-004   1.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 33 E= 6.3e-005
1.000000 0.000000 0.000000 0.000000
0.000000 0.393939 0.000000 0.606061
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAGCTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGCTG   CAGCTGTT          5          0   3.1e-002   4.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 4.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGGTAGAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGTAGAT   ATCTACCT          5          0   3.1e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 3.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AGTATTAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTATTAG   CTAATACT          7          1   3.4e-002   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds