# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CUX1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CUX1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CUX1.fasta (Sat Feb 12 17:59:04 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.288 C 0.196 G 0.200 T 0.316


MOTIF RATCAATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RATCAATA   TATTGATY         25          1   2.2e-007   6.0e-004
#         GATCAATA   TATTGATC         13          0   1.0e-004   2.8e-001
#         AATCAATA   TATTGATT         12          1   1.5e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 6.0e-004
0.480000 0.000000 0.520000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CATTGATC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATTGATC   GATCAATG          6          0   1.5e-002   3.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.9e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATCGATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCGATA   TATCGATT          5          0   3.1e-002   7.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTAATCAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTAATCAA   TTGATTAG          5          0   3.1e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTATTGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTATTGA   TCAATAAT          6          1   6.1e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.71 seconds