# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CTCFL/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CTCFL.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CTCFL.fasta (Sat Feb 12 17:59:02 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.119 C 0.374 G 0.379 T 0.128


MOTIF AGRGGGCG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGRGGGCG   CGCCCYCT         61          1   2.4e-019   4.9e-016
#         AGGGGGCG   CGCCCCCT         50          1   1.7e-015   3.5e-012
#         AGAGGGCG   CGCCCTCT         11          0   4.4e-004   9.0e-001

letter-probability matrix: alength= 4 w= 8 nsites= 61 E= 4.9e-016
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.180328 0.000000 0.819672 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGGGGGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGGGGAG   CTCCCCCT         10          0   8.9e-004   1.7e+000
#         AGGGGGAG   CTCCCCCT         10          0   8.9e-004   1.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.7e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CCACAAGG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCACAAGG   CCTTGTGG          8          0   3.7e-003   6.9e+000
#         CCACAAGG   CCTTGTGG          8          0   3.7e-003   6.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 6.9e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGGGGGCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGGGGCA   TGCCCCCT         10          1   5.4e-003   9.9e+000
#         AGGGGGCA   TGCCCCCT         10          1   5.4e-003   9.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 9.9e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCTCCAGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCTCCAGG   CCTGGAGG          6          1   6.1e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.1e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.75 seconds