# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CTBP1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CTBP1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CTBP1.fasta (Sat Feb 12 17:58:59 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n01.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.179 C 0.320 G 0.308 T 0.193


MOTIF GCCCTCCC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCTCCC   GGGAGGGC          5          0   3.1e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 8.5e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCCCCGC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCCCGC   GCGGGGCG          7          1   3.4e-002   9.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 9.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCCCAGGC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCCAGGC   GCCTGGGC          4          0   6.2e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.7e+002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGCAGCCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCAGCCG   CGGCTGCG          5          1   1.1e-001   2.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.9e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGAGGAAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGAAG   CTTCCTCT          3          0   1.2e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.68 seconds