# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CREM/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CREM.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CREM.fasta (Sat Feb 12 17:58:57 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.168 C 0.331 G 0.326 T 0.176


MOTIF GACGTCAB DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACGTCAB   VTGACGTC         38          1   1.7e-011   4.1e-008
#         GACGTCAC   GTGACGTC         30          1   6.3e-009   1.5e-005
#         GACGTCAT   ATGACGTC         14          0   5.1e-005   1.2e-001
#         GACGTCAG   CTGACGTC         12          0   2.1e-004   5.1e-001

letter-probability matrix: alength= 4 w= 8 nsites= 38 E= 4.1e-008
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.526316 0.210526 0.263158


MOTIF CGTCATCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTCATCA   TGATGACG         12          0   2.1e-004   4.7e-001
#         CGTCATCA   TGATGACG         12          0   2.1e-004   4.7e-001

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 4.7e-001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCGCGCCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCGCGCCA   TGGCGCGC          6          0   1.5e-002   3.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.2e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TGACGCCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGACGCCA   TGGCGTCA          6          0   1.5e-002   3.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.2e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGATGACG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGATGACG   CGTCATCG          5          0   3.1e-002   6.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds