# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CREB3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CREB3.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CREB3.fasta (Sat Feb 12 17:58:56 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.270 C 0.239 G 0.232 T 0.258


MOTIF ARATGGAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ARATGGAG   CTCCATYT         55          0   9.8e-019   1.8e-015
#         AGATGGAG   CTCCATCT         46          0   1.5e-015   2.6e-012
#         AAATGGAG   CTCCATTT          9          0   1.8e-003   3.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 1.8e-015
1.000000 0.000000 0.000000 0.000000
0.163636 0.000000 0.836364 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AACCAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCAGAG   CTCTGGTT         35          0   8.1e-012   1.4e-008
#         AACCAGAG   CTCTGGTT         35          0   8.1e-012   1.4e-008

letter-probability matrix: alength= 4 w= 8 nsites= 35 E= 1.4e-008
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAGAGGCR DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGAGGCR   YGCCTCTG         15          0   2.5e-005   4.2e-002
#         CAGAGGCA   TGCCTCTG          8          0   3.7e-003   6.3e+000
#         CAGAGGCG   CGCCTCTG          7          0   7.5e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 4.2e-002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.533333 0.000000 0.466667 0.000000


MOTIF AGCCCCTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCCCTA   TAGGGGCT         10          0   8.9e-004   1.5e+000
#         AGCCCCTA   TAGGGGCT         10          0   8.9e-004   1.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.5e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTTCAAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTTCAAA   TTTGAACC         10          0   8.9e-004   1.5e+000
#         GGTTCAAA   TTTGAACC         10          0   8.9e-004   1.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.5e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.72 seconds