# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CDC5L/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CDC5L.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CDC5L.fasta (Sat Feb 12 17:58:47 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.265 C 0.227 G 0.245 T 0.264


MOTIF TGTGTGYA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TGTGTGYA   TRCACACA         43         18   4.6e-004   6.6e-001
#         TGTGTGTA   TACACACA         36         18   6.9e-003   9.9e+000
#         TGTGTGCA   TGCACACA          7          0   7.5e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 6.6e-001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.159091 0.000000 0.840909
1.000000 0.000000 0.000000 0.000000


MOTIF GCCACACA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCACACA   TGTGTGGC          6          0   1.5e-002   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.1e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACAAAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACAAAG   CTTTGTGT          7          1   3.4e-002   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAACACAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACACAC   GTGTGTTT         13          5   4.5e-002   6.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 6.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACAACCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACAACCA   TGGTTGTG          7          1   3.4e-002   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.5e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.81 seconds