# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CBX5/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CBX5.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CBX5.fasta (Sat Feb 12 17:58:41 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.257 C 0.251 G 0.242 T 0.250


MOTIF CTGCAGAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGCAGAA   TTCTGCAG         16          0   1.2e-005   2.8e-002
#         CTGCAGAA   TTCTGCAG         16          0   1.2e-005   2.8e-002

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.8e-002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGGCTCCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGCTCCA   TGGAGCCC         12          1   1.5e-003   3.5e+000
#         GGGCTCCA   TGGAGCCC         12          1   1.5e-003   3.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.5e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCAGAGGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGAGGA   TCCTCTGG          9          0   1.8e-003   4.1e+000
#         CCAGAGGA   TCCTCTGG          9          0   1.8e-003   4.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.1e+000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAAGTCT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAAGTCT   AGACTTCT          8          0   3.7e-003   8.3e+000
#         AGAAGTCT   AGACTTCT          8          0   3.7e-003   8.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.3e+000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CTGTTGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTTGAA   TTCAACAG          7          0   7.5e-003   1.7e+001
#         CTGTTGAA   TTCAACAG          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.98 seconds