# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_CBX3/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/CBX3.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/CBX3.fasta (Sat Feb 12 17:58:40 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.275 C 0.224 G 0.217 T 0.284


MOTIF AYTTCTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AYTTCTCA   TGAGAART         20          0   6.4e-007   1.6e-003
#         ACTTCTCA   TGAGAAGT         10          0   8.9e-004   2.2e+000
#         ATTTCTCA   TGAGAAAT         10          0   8.9e-004   2.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 1.6e-003
1.000000 0.000000 0.000000 0.000000
0.000000 0.500000 0.000000 0.500000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGCTGA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCTGA   TCAGCTGT         13          0   1.0e-004   2.5e-001
#         ACAGCTGA   TCAGCTGT         13          0   1.0e-004   2.5e-001

letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.5e-001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCAAGGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCAAGGCA   TGCCTTGC          9          0   1.8e-003   4.4e+000
#         GCAAGGCA   TGCCTTGC          9          0   1.8e-003   4.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.4e+000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAGTAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAGTAAA   TTTACTTC          8          0   3.7e-003   8.7e+000
#         GAAGTAAA   TTTACTTC          8          0   3.7e-003   8.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 8.7e+000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCAGAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCAGAC   GTCTGCTG          5          0   3.1e-002   7.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.2e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.68 seconds