# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_C11orf30/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/C11orf30.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/C11orf30.fasta (Sat Feb 12 17:58:36 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.257 C 0.240 G 0.244 T 0.258


MOTIF GABTCAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GABTCAGC   GCTGAVTC         78          0   2.6e-027   6.0e-024
#         GACTCAGC   GCTGAGTC         45          0   3.2e-015   7.5e-012
#         GAGTCAGC   GCTGACTC         39          0   3.6e-013   8.5e-010
#         GATTCAGC   GCTGAATC          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 78 E= 6.0e-024
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.487179 0.423077 0.089744
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATGCTGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCTGAG   CTCAGCAT          7          0   7.5e-003   1.6e+001
#         ATGCTGAG   CTCAGCAT          7          0   7.5e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.6e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TCAGCAAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TCAGCAAA   TTTGCTGA          7          0   7.5e-003   1.5e+001
#         TCAGCAAA   TTTGCTGA          7          0   7.5e-003   1.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.5e+001
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACTTCCT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACTTCCT   AGGAAGTT          6          0   1.5e-002   3.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAATGCT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGCT   AGCATTTT          5          0   3.1e-002   6.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 0.69 seconds