# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_BRF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/BRF1.fasta
#   positives: 110 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/BRF1.fasta (Sat Feb 12 17:58:33 EST 2022)
#   negatives: 110 from shuffled positives
#        host: c27n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.261 C 0.216 G 0.254 T 0.269


MOTIF AAAACGCT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACGCT   AGCGTTTT          2          0   2.5e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAATATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATATA   TATATTTT          2          0   2.5e-001   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACTTATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACTTATA   TATAAGTT          2          0   2.5e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGCATTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGCATTA   TAATGCTT          2          0   2.5e-001   3.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAGCCAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAGCCAG   CTGGCTGT          2          0   2.5e-001   3.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.39 seconds