# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_BRD9/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/BRD9.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/BRD9.fasta (Sat Feb 12 17:58:33 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:51 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.237 C 0.251 G 0.265 T 0.246


MOTIF CTGTGTGA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGTGTGA   TCACACAG          9          0   1.8e-003   5.0e+000
#         CTGTGTGA   TCACACAG          9          0   1.8e-003   5.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.0e+000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACCCGGG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACCCGGG   CCCGGGTT          6          0   1.5e-002   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAGTCT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTCT   AGACTTTT          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CAGGGGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGGGGCC   GGCCCCTG          4          0   6.2e-002   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.6e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAGAGAGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGAGAGG   CCTCTCTG          5          1   1.1e-001   2.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.8e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.70 seconds