# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_BMI1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/BMI1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/BMI1.fasta (Sat Feb 12 17:58:29 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c28n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:10 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.205 C 0.305 G 0.293 T 0.197


MOTIF CATGRCAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATGRCAA   TTGYCATG         28          0   1.7e-009   4.3e-006
#         CATGGCAA   TTGCCATG         20          0   6.4e-007   1.7e-003
#         CATGACAA   TTGTCATG          8          0   3.7e-003   9.6e+000

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.3e-006
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.285714 0.000000 0.714286 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTTGCTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTTGCTA   TAGCAACC          9          0   1.8e-003   4.5e+000
#         GGTTGCTA   TAGCAACC          9          0   1.8e-003   4.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 4.5e+000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAAGTTAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAAGTTAC   GTAACTTC          7          0   7.5e-003   1.8e+001
#         GAAGTTAC   GTAACTTC          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGGCAACC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCAACC   GGTTGCCT          5          0   3.1e-002   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CGTTTCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGTTTCCA   TGGAAACG          5          0   3.1e-002   7.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.54 seconds