# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_BHLHE40/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/BHLHE40.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/BHLHE40.fasta (Sat Feb 12 17:58:28 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:42 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.178 C 0.327 G 0.321 T 0.174


MOTIF KCACGTGM DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    KCACGTGM   KCACGTGM         56          2   2.3e-016   5.8e-013
#         GCACGTGC   GCACGTGC         25          0   1.6e-008   4.0e-005
#         GCACGTGA   TCACGTGC         21          2   2.3e-005   5.8e-002
#         TCACGTGA   TCACGTGA         10          0   8.9e-004   2.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 56 E= 5.8e-013
0.000000 0.000000 0.642857 0.357143
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.375000 0.625000 0.000000 0.000000


MOTIF CACGTGCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGTGCG   CGCACGTG          6          0   1.5e-002   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.4e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GTGAGTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTGAGTCA   TGACTCAC          5          0   3.1e-002   6.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.9e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAACGTGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACGTGA   TCACGTTT          4          0   6.2e-002   1.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CACGAGAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACGAGAC   GTCTCGTG          4          0   6.2e-002   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.3e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.66 seconds