# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_BDP1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/BDP1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/BDP1.fasta (Sat Feb 12 17:58:27 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.270 C 0.222 G 0.231 T 0.276


MOTIF AAGGGGCT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGGCT   AGCCCCTT          3          0   1.2e-001   3.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACTAAATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTAAATA   TATTTAGT          3          0   1.2e-001   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGCGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGCGGAA   TTCCGCCT          3          0   1.2e-001   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGAAGAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGAAGAA   TTCTTCAT          3          0   1.2e-001   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GCCGGCGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCCGGCGC   GCGCCGGC          3          0   1.2e-001   3.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.6e+002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.87 seconds