# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_BACH1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/BACH1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/BACH1.fasta (Sat Feb 12 17:58:24 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.283 C 0.216 G 0.218 T 0.283


MOTIF MTGASTCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    MTGASTCA   TGASTCAK        101          3   5.1e-032   1.1e-028
#         CTGAGTCA   TGACTCAG         86          1   9.5e-029   2.1e-025
#         ATGACTCA   TGAGTCAT         61          2   4.3e-018   9.6e-015
#         CTGACTCA   TGAGTCAG         17          0   5.8e-006   1.3e-002
#         ATGAGTCA   TGACTCAT          7          0   7.5e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 101 E= 1.1e-028
0.386139 0.613861 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.445545 0.554455 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATTGCTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTGCTG   CAGCAATT         14          0   5.1e-005   9.5e-002
#         AATTGCTG   CAGCAATT         14          0   5.1e-005   9.5e-002

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 9.5e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF GAGTCATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGTCATA   TATGACTC          7          0   7.5e-003   1.4e+001
#         GAGTCATA   TATGACTC          7          0   7.5e-003   1.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.4e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATGCTGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATGCTGA   TCAGCATT          6          0   1.5e-002   2.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACTCAGCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCAGCA   TGCTGAGT          6          1   6.1e-002   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.85 seconds