# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ATF1/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ATF1.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ATF1.fasta (Sat Feb 12 17:58:17 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:27:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.160 C 0.336 G 0.337 T 0.167


MOTIF GACGTCAS DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GACGTCAS   STGACGTC         36          0   3.7e-012   9.0e-009
#         GACGTCAC   GTGACGTC         33          0   3.8e-011   9.0e-008
#         GACGTCAG   CTGACGTC         11          0   4.4e-004   1.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 9.0e-009
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.861111 0.138889 0.000000


MOTIF CCGGCGCG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCGGCGCG   CGCGCCGG         11          0   4.4e-004   9.7e-001
#         CCGGCGCG   CGCGCCGG         11          0   4.4e-004   9.7e-001

letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 9.7e-001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CGCCGGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCCGGAA   TTCCGGCG          5          0   3.1e-002   6.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.7e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGACGCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGACGCA   TGCGTCAG          5          0   3.1e-002   6.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.6e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGATGAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGATGAC   GTCATCAG          5          0   3.1e-002   6.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 6.5e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.63 seconds