# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/K562/inference_raw/DREME/RankLinear0.3_10_ARHGAP35/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/K562/fasta/RankLinear0.3_10/ARHGAP35.fasta
#   positives: 250 from ../result/final_prediction/K562/fasta/RankLinear0.3_10/ARHGAP35.fasta (Sat Feb 12 17:58:05 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c27n12.farnam.hpc.yale.internal
#        when: Sat Feb 12 18:28:03 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.231 C 0.290 G 0.263 T 0.216


MOTIF CGCGAGAH DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCGAGAH   DTCTCGCG         28          0   1.7e-009   4.4e-006
#         CGCGAGAT   ATCTCGCG         12          0   2.1e-004   5.6e-001
#         CGCGAGAA   TTCTCGCG         11          0   4.4e-004   1.1e+000
#         CGCGAGAC   GTCTCGCG          7          0   7.5e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 28 E= 4.4e-006
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.392857 0.250000 0.000000 0.357143


MOTIF CATCCATC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATCCATC   GATGGATG         16          4   5.1e-003   1.3e+001
#         CATCCATC   GATGGATG         16          4   5.1e-003   1.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.3e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGTGAGTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGAGTG   CACTCACT          7          0   7.5e-003   1.8e+001
#         AGTGAGTG   CACTCACT          7          0   7.5e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATGGACAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGGACAG   CTGTCCAT          5          0   3.1e-002   7.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 7.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACTCACCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACTCACCC   GGGTGAGT          4          0   6.2e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.71 seconds