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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.242 C 0.258 G 0.258 T 0.242 

MOTIF 1-AAACARTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.978731 0.007247 0.007247 0.006776
 0.978731 0.007247 0.007247 0.006776
 0.784340 0.007247 0.007247 0.201167
 0.006776 0.784811 0.007247 0.201167
 0.784340 0.007247 0.007247 0.201167
 0.589949 0.007247 0.396029 0.006776
 0.006776 0.007247 0.201638 0.784340
 0.006776 0.979202 0.007247 0.006776

MOTIF 2-TGGGTAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.005315 0.005684 0.005684 0.983317
 0.157795 0.005684 0.831206 0.005315
 0.157795 0.005684 0.831206 0.005315
 0.157795 0.005684 0.831206 0.005315
 0.157795 0.005684 0.068806 0.767715
 0.983317 0.005684 0.005684 0.005315
 0.678357 0.005684 0.005684 0.310275
 0.157795 0.005684 0.158164 0.678357

MOTIF 3-MGTTCCGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.628826 0.358482 0.006560 0.006133
 0.006133 0.277330 0.710403 0.006133
 0.006133 0.006560 0.182521 0.804787
 0.006133 0.006560 0.006560 0.980747
 0.006133 0.805213 0.182521 0.006133
 0.006133 0.981174 0.006560 0.006133
 0.006133 0.006560 0.805213 0.182094
 0.006133 0.182521 0.710403 0.100943

MOTIF 4-CCTAGGTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.005671 0.982592 0.006066 0.005671
 0.005671 0.982592 0.006066 0.005671
 0.005671 0.006066 0.006066 0.982197
 0.656776 0.006066 0.168776 0.168382
 0.005671 0.168776 0.819881 0.005671
 0.168382 0.006066 0.657170 0.168382
 0.168382 0.006066 0.169038 0.656514
 0.005671 0.982592 0.006066 0.005671

MOTIF 5-CGCGGGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.002182 0.842166 0.090861 0.064791
 0.064791 0.002334 0.930693 0.002182
 0.190009 0.680258 0.002334 0.127400
 0.064791 0.252769 0.617649 0.064791
 0.127400 0.002334 0.779557 0.090709
 0.064791 0.153470 0.654340 0.127400
 0.064791 0.216078 0.654340 0.064791
 0.002182 0.064943 0.805475 0.127400

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZZZ3.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZZZ3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.49 seconds
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