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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.216 C 0.283 G 0.283 T 0.216 

MOTIF 1-YGTMKACR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.002496 0.337320 0.003268 0.656917
 0.162422 0.003268 0.831814 0.002496
 0.002496 0.003268 0.003268 0.990969
 0.496732 0.457555 0.043217 0.002496
 0.002496 0.043217 0.457555 0.496732
 0.990969 0.003268 0.003268 0.002496
 0.002496 0.831814 0.003268 0.162422
 0.656917 0.003268 0.337320 0.002496

MOTIF 2-CAAGCCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.003832 0.987318 0.005018 0.003832
 0.863443 0.127707 0.005018 0.003832
 0.617671 0.005018 0.250790 0.126521
 0.126521 0.005018 0.864629 0.003832
 0.003832 0.987318 0.005018 0.003832
 0.003832 0.987318 0.005018 0.003832
 0.003832 0.250790 0.005018 0.740360
 0.003832 0.987318 0.005018 0.003832

MOTIF 3-AAGTGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.844346 0.005720 0.005720 0.144214
 0.844346 0.145566 0.005720 0.004368
 0.004368 0.005720 0.985544 0.004368
 0.004368 0.005720 0.005720 0.984192
 0.284511 0.005720 0.705402 0.004368
 0.984192 0.005720 0.005720 0.004368
 0.704050 0.285862 0.005720 0.004368
 0.984192 0.005720 0.005720 0.004368

MOTIF 4-AAGCACAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.928773 0.025773 0.025773 0.019682
 0.928773 0.025773 0.025773 0.019682
 0.019682 0.025773 0.934864 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.928773 0.025773 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.928773 0.025773 0.025773 0.019682
 0.019682 0.025773 0.025773 0.928773

MOTIF 5-GAGTCCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.019682 0.025773 0.934864 0.019682
 0.928773 0.025773 0.025773 0.019682
 0.019682 0.025773 0.934864 0.019682
 0.019682 0.025773 0.025773 0.928773
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.934864 0.025773 0.019682
 0.019682 0.025773 0.934864 0.019682

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/GM12878/fasta/RankLinear0.5_10/ZSCAN29.fasta --oc ../result/final_prediction/GM12878/inference_raw/STREME/RankLinear0.5_10_ZSCAN29/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.71 seconds
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